Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.

jackspace14

バイオインフォマティクス

Ensembl Database

Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.

jackspace14

Backend

Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific control.

jackspace14

科学計算

Scientific Method

The scientific method applied to computational research, data science, and experimental software engineering. Covers hypothesis formulation, experimental design, controls, reproducibility, and avoiding common methodological pitfalls like p-hacking, HARKing, and confirmation bias. Use when ", " mentioned.

Supraforge14

学術

Scholar Evaluation

Systematic framework for evaluating scholarly and research work based on the ScholarEval methodology. This skill should be used when assessing research papers, evaluating literature reviews, scoring research methodologies, analyzing scientific writing quality, or applying structured evaluation criteria to academic work. Provides comprehensive assessment across multiple dimensions including problem formulation, literature review, methodology, data collection, analysis, results interpretation, and scholarly writing quality.

Supraforge14

計算化学

Pdb Database

Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.

Supraforge14

計算化学

Biomni

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.

Supraforge14

LLM・AI

cuhk-aim-group-neuroclaw-skills-research-idea-skill-md

Use this skill whenever the user wants to generate or refine a research idea through literature search and discussion. Triggers include: 'research idea', 'brainstorm idea', 'generate idea', 'research-idea', 'idea generation', 'discuss new direction', or any request to explore literature and output to IDEA.md. This skill is the **mandatory interface-layer idea generator** in NeuroClaw: it calls networking search skills to retrieve recent papers, identifies gaps/trends, then iteratively discusses with the user to finalize a structured idea, always saving the result as IDEA.md.

CUHK-AIM-Group14

機械学習

fMRI Skill (Modality Layer)

Use this skill whenever the user wants to perform fMRI preprocessing, first-level analysis, ROI extraction, functional connectivity, effective connectivity, or atlas-based alignment to MNI152 space using either fMRIPrep, HCP-style pipelines, or CONN Toolbox. Triggers include: 'fmri', 'fMRI analysis', 'functional connectivity', 'effective connectivity', 'ROI extraction', 'seed-based correlation', 'PPI', 'DCM', 'atlas alignment', 'MNI152', 'HCP pipeline', 'CONN toolbox', or any request involving BOLD data.

CUHK-AIM-Group14

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Assembly Index

Lee Cronin's Assembly Theory for molecular complexity measurement and life detection via assembly index computation.

plurigrid17

ナレッジベース

Paper Finder

Discover recent arXiv papers matching a research profile and generate Obsidian-compatible Markdown notes. Use this skill when the user wants to find new papers, refresh their literature inbox, or search arXiv based on their interests.

JaimeParker17

科学計算

Catcolab Regulatory Networks

CatColab Regulatory Networks - signed graphs for molecular biology modeling gene regulatory networks with positive (activating) and negative (inhibiting) edges.

plurigrid17

バイオインフォマティクス

Waddington Landscape

Waddington's epigenetic landscape: cell fate as gradient flow on potential surfaces, connecting developmental biology to dynamical systems, Schrödinger bridges, and fractional diffusion

plurigrid17

機械学習

Qri Valence

"qri-valence skill"

plurigrid17

計算化学

Assembly Index

Lee Cronin's Assembly Theory for molecular complexity measurement and

plurigrid17

学術

Literature Research

Search academic literature and perform deep research reviews. Use when user asks to search PubMed, find academic papers, or do literature reviews.

nickjwells17

学術

Manuscript Review Panel

Run a multi-perspective review panel on a manuscript draft to help authors improve it for high-impact publication. Simulates 13 specialist reviewers who each review the paper, discuss disagreements, and produce a synthesized improvement roadmap. Agents search PubMed, bioRxiv, and the web for references. MANDATORY TRIGGERS: manuscript review, paper review, review my paper, review this manuscript, review panel, improve my paper, pre-submission review, mock peer review, reviewer feedback, review draft, multi-agent review, help me improve this paper, feedback on my manuscript, strengthen my paper. Use when the user uploads a manuscript (PDF, DOCX, or text) and asks for review, feedback, or improvement suggestions — even casually like "what do you think of this paper" or "can you review this draft". Also trigger for anticipating reviewer comments or pre-submission checks.

hyeshik16

計算化学

Dqmc Advanced

Advanced DQMC features including unequal-time measurements, analytic continuation, and queue system internals. Use when enabling dynamical correlations, performing MaxEnt continuation, or understanding HDF5 data structure.

edwnh16

学術

Standard installation

Use this skill when users need to search academic papers, download research documents, extract citations, or gather scholarly information. Triggers include: requests to "find papers on", "search research about", "download academic articles", "get citations for", or any request involving academic databases like arXiv, PubMed, Semantic Scholar, or Google Scholar. Also use for literature reviews, bibliography generation, and research discovery.

mghasemi15

学術

Gene Set Enrichment

Perform gene set enrichment analysis using AI research providers. Analyzes lists of genes to identify biological themes, pathways, and functional associations.

monarch-initiative15

データエンジニアリング

BIDS Conversion

Use this skill for "convert to BIDS", "BIDS format", "create BIDS dataset", "BIDS sidecar", "participants.tsv", "events.tsv", "EEG BIDS", "EMG BIDS", "MEG BIDS", "fMRI BIDS", "BIDS validator", "channel locations", "electrode positions", "BIDS metadata", or when the user wants to convert neuroscience data to Brain Imaging Data Structure (BIDS) format or validate BIDS compliance.

neuromechanist15

教育

Experiment Design

Use this skill for "design experiment", "create PsychoPy experiment", "stimulus presentation", "experiment protocol", "timing validation", "trial structure", "block design", "event-related design", "PsychoPy builder", "create stimuli", "LSL markers", "Lab Streaming Layer", "event markers", "trigger codes", or when the user wants to design or implement a neuroscience experiment.

neuromechanist15

LLM・AI

Hugging Face Evaluation

Add evaluation results to Hugging Face model repositories using the .eval_results/ format. Uses HF CLI for PR management and manual YAML creation.

huggingface15

学術

Literature Review

Use this skill for "write a literature review", "synthesize papers", "review the literature", "summarize research findings", "identify research trends", "gap analysis", "thematic review", "systematic review", "scoping review", "narrative review", "compare studies", "research synthesis", or when the user wants to synthesize multiple papers into a cohesive literature review.

neuromechanist15

学術

Hypogenic

Automated hypothesis generation and testing using large language models. Use this skill when generating scientific hypotheses from datasets, combining literature insights with empirical data, testing hypotheses against observational data, or conducting systematic hypothesis exploration for research discovery in domains like deception detection, AI content detection, mental health analysis, or other empirical research tasks.

jackspace14

バイオインフォマティクス

String Database

Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.

jackspace14

生産性・インテグレーション

Latchbio Integration

Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.

jackspace14

バイオインフォマティクス

Gget

CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.

jackspace14

バイオインフォマティクス

Gwas Database

Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epidemiology and polygenic risk scores.

jackspace14

学術

Biorxiv Database

Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.

jackspace14

生化学者・生物物理学者

生化学者・生物物理学者

Labarchive Integration

Ensembl Database

Uniprot Database

Scientific Method

Scholar Evaluation

Pdb Database

Biomni

cuhk-aim-group-neuroclaw-skills-research-idea-skill-md

fMRI Skill (Modality Layer)

Assembly Index

Paper Finder

Catcolab Regulatory Networks

Waddington Landscape

Qri Valence

Assembly Index

Literature Research

Manuscript Review Panel

Dqmc Advanced

Standard installation

Gene Set Enrichment

BIDS Conversion

Experiment Design

Hugging Face Evaluation

Literature Review

Hypogenic

String Database

Latchbio Integration

Gget

Gwas Database

Biorxiv Database