职业

其他生物科学家

4114 个技能

AI 推荐

4114 个技能

Sc Grn

Gene regulatory network inference from scRNA-seq using SCENIC or GRNBoost2. Input: --input <.h5ad> --output <dir>. Output: regulons.json, grn_network.csv, regulon_activity_heatmap.png.

garrisonfaridi0

域名与 DNS 工具

spatial-domains — Spatial Domain Identification

Spatial domain identification in spatial transcriptomics data using graph-based or deep learning methods. Input: --input <processed.h5ad> --output <dir>. Output: domains.h5ad, domain_plot.png, report.md. Falls back to Leiden clustering if SpaGCN/STAGATE/torch not installed; emits WARNING to trace log. Install DL support: pip install omicsclaw[spatial-domains]

garrisonfaridi0

生物信息学

Geo

Search and download datasets from NCBI GEO (Gene Expression Omnibus). Input: --query <search_string> [--accession <GSExxxxxx>] --output <dir>. Output: metadata.json, sample_table.csv, series_matrix.txt (if --accession provided). Uses GEOparse + NCBI E-utilities.

garrisonfaridi0

生物信息学

Reactome Enrichment

Pathway enrichment analysis using Reactome via gseapy. Input: --gene-list <genes.txt or comma-separated> --organism <human|mouse|rat> --output <dir>. Output: reactome_enrichment.csv (pathway, NES, padj), dot_plot.png. Distinct from built-in gene-enrichment skill (GO terms); this skill uses Reactome pathway database only.

garrisonfaridi0

生物信息学

Open Targets

Query Open Targets Platform for disease-gene associations, drug targets, and genetic evidence. Input: --disease <EFO_ID or name> [--gene <gene_symbol>] --output <dir>. Output: associations.json, evidence_summary.csv. Distinct from built-in gwas-database skill (GWAS Catalog); this skill uses Open Targets Platform GraphQL API.

garrisonfaridi0

其他生物科学家

Sc Grn

spatial-domains — Spatial Domain Identification

Geo

Reactome Enrichment

Open Targets

其他生物科学家

Sc Grn

spatial-domains — Spatial Domain Identification

Geo

Reactome Enrichment

Open Targets

Sc Preprocessing

Sc De

Disease Gene Atlas

Spatial Annotate

Sc Multiome

Spatial Cnv

Spatial Communication

Spatial Deconv

Spatial Enrichment

Spatial Preprocess

Spatial Register

Spatial De

Spatial Integrate

Sc Pseudotime

Bio Phylo Tree Io

Bio Expression Matrix Gene Id Mapping

Bio Comparative Genomics Positive Selection

Bio Comparative Genomics Synteny Analysis

Bio Expression Matrix Sparse Handling

Bio Workflows Somatic Variant Pipeline

Bio Workflows Fastq To Variants

Bio Orchestrator

Bio Workflows Timecourse Pipeline

Database Lookup

Genome Compare