科学计算

Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.

slurpyb0

Hypothesis Generation Network

Generate mechanism-based hypotheses and design validation experiments. Use this skill to design control experiments (e.g., using nonsense mutations as knockouts) and reconstruct plasmid pathways (e.g., switching between pathway-level and enzyme-level analysis).

SmartisanNaive0

Deeptools

NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.

Exploratory Data Analysis

Primekg

Query the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biological data including genes, drugs, diseases, phenotypes, and more.

NeuroKit2

Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements. Applicable for heart rate variability analysis, event-related potentials, complexity measures, autonomic nervous system assessment, psychophysiology research, and multi-modal physiological signal integration.

Etetoolkit

Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.

Discrete Event Simulator

Discrete event simulation skill for modeling and analyzing complex systems with stochastic processes.

RunnerQuan0

Datacamp

Access DataCamp data science and analytics courses

RunnerQuan0

Dotnet Gc Memory

Tunes GC and memory. GC modes, LOH/POH, Gen0/1/2, Span/Memory deep patterns, ArrayPool.

rudironsoni0

Invisible Wall State

Hidden emotional state tracking for relationship simulation

thinkinginmath0

Cloning Agent

Transforms the agent into a computational molecular biologist capable of designing, verifying, and exporting DNA cloning strategies using pydna.

Change-Bio0

Dotnet Gc Memory

Tunes GC and memory. GC modes, LOH/POH, Gen0/1/2, Span/Memory deep patterns, ArrayPool.

rudironsoni0

Pymc

Bayesian statistical modeling and probabilistic programming

datappt80

Pymatgen

Materials science analysis, crystal structure manipulation, and phase diagrams

datappt80

Julia Numerical Computing Skill

Expert guidance on Julia programming for numerical computing and scientific computing — covering DifferentialEquations.jl for ODE/SDE/PDE solving, JuliaDiff for automatic differentiation, JuMP for optimization, CUDA.jl for GPU computing, Plots.jl for visualization, and high-performance workflows. Triggers when user asks about: solving differential equations in Julia, ODE/SDE/PDE solvers, automatic differentiation, optimization with JuMP, GPU computing in Julia, Julia performance, scientific computing with Julia, or any numerical task in Julia.

RomulanAI0

Seed Determinism Auditor

Audit random seed control and determinism boundaries across pipeline, attacks, and evaluation outputs. Use when users ask for reproducibility drift checks, nondeterminism investigation, or seed policy enforcement.

RICHAAARC0

Drug Interactions

CYP450 system, P-glycoprotein, pharmacokinetic and pharmacodynamic interactions, QT prolongation, serotonin syndrome, interaction severity classification, and clinical management

ProFlow-Labs-Ai0

Regression Analysis

Regression methods for medical research including linear, logistic, Poisson, and negative binomial regression with model diagnostics, assumption checking, and interpretation guidance.

ProFlow-Labs-Ai0

Model Drift Detection

Detectar degradación progresiva de modelos ML en producción monitorizando scores y métricas biométricas

davidcastagnetoa0

Ultrastructure To Dynamics Compiler

Systematic methodology for compiling microscale neuronal ultrastructure into macroscale dynamical models. Bridges connectomics data (electron microscopy) with neural dynamics simulation through automated pipeline: morphology extraction, passive/active property mapping, model reduction, and network assembly.

hiyenwong0

Cosmic Database

Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.

Fluidsim

Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.

NeuroKit2

PyOpenMS

Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal processing, feature detection, peptide identification, and quantitative analysis. Apply when working with mass spectrometry data, analyzing proteomics experiments, or processing metabolomics datasets.

Agente Biologia — A Vida como Algoritmo

Agente especialista em Biologia para FUVEST — 1ª fase. Biologia tem presença consistente nas 90 questões objetivas, especialmente Genética e Ecologia, que são os tópicos favoritos da FUVEST. Cobre: Citologia, Histologia, Fisiologia Humana, Genética (Mendel + Molecular), Evolução, Ecologia, Botânica e Zoologia. Entra no ciclo após Matemática, Português e Física consolidarem base. Opera em integração com vestibular-tutor, vestibular-srs e agente-quimica (bioquímica celular). Acionar quando Antonio mencionar qualquer tópico de biologia, células, genética, evolução, ecossistemas, ou o orchestrator abrir sessão de Biologia.

GeorgeDoors8880

Bayes Reasoner

An internal cognitive engine for quantitative root cause analysis. Use this autonomously when you need to weigh competing hypotheses, prevent anchoring bias, or determine the most efficient next diagnostic step.

NiloCK0

Blast System

Full blast pipeline specification for BlastSimulator2026: 4-step simulation (energy propagation, Voronoi fragmentation, fragment shape generation, tiered physics). Covers voxel rock composition, Delaunay/Voronoi algorithms, Tier A/B physics, balance constants, and atomic task breakdown. Use when working on blast mechanics, mining systems, fragment physics, or voxel grid code.

Nico23980