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科學計算除錯銷售同市場推廣 LLM 同 AI 系統管理生產力同整合代碼質素 Git 工作流程架構模式文件項目管理測試金融同投資安全知識庫技術文檔 Backend Frontend 教育 CI/CD 自動化工具機器學習內容創作數據工程遊戲開發學術腳本編寫 CMS 同平台流動裝置雲端 IDE 插件套件同發佈數據分析框架內部結構媒體設計 Full Stack 地產同法律生物信息學 CLI 工具 SQL 數據庫計算化學容器實驗室工具數據庫工具健康同健身智能合約監控域名同 DNS 工具 Web3 工具養生同健康支付文學同寫作電商開發哲學同倫理天文同物理電子商務占卜同玄學手工藝術商業應用 DeFi NoSQL 數據庫烹飪 $Undefined

睇全部分類

科學計算除錯銷售同市場推廣 LLM 同 AI 系統管理生產力同整合代碼質素 Git 工作流程架構模式文件項目管理測試金融同投資安全知識庫技術文檔 Backend Frontend 教育 CI/CD 自動化工具機器學習內容創作數據工程遊戲開發學術腳本編寫 CMS 同平台流動裝置雲端 IDE 插件套件同發佈數據分析框架內部結構媒體設計 Full Stack 地產同法律生物信息學 CLI 工具 SQL 數據庫計算化學容器實驗室工具數據庫工具健康同健身智能合約監控域名同 DNS 工具 Web3 工具養生同健康支付文學同寫作電商開發哲學同倫理天文同物理電子商務占卜同玄學手工藝術商業應用 DeFi NoSQL 數據庫烹飪 $Undefined

科學計算

Ksb D01 K0057

PV AI Technology Ecosystem: Comprehensive understanding of the AI technology ecosystem relevant to pharmacovigilance including c...

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Cosmic Database

Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.

Bio Flow Cytometry Clustering Phenotyping

Unsupervised clustering and cell type identification for flow/mass cytometry. Covers FlowSOM, Phenograph, and CATALYST workflows. Use when discovering cell populations in high-dimensional cytometry data without predefined gates.

Methodology Extractor

Batch extraction of experimental methods from multiple papers for protocol.

GeorgeDoors8880

Chemical Structure Converter

Convert between IUPAC names, SMILES strings, and molecular formulas for chemical compounds. Supports structure validation, identifier interconversion, and cheminformatics data preparation for drug discovery and chemical research workflows.

GeorgeDoors8880

Evolution Engine

Runs Darwinian natural selection on meme genomes — selection, crossover, and mutation to produce the next generation

Hmdb Database

Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.

Protein Structure

Use when planning or staging protein-structure prediction or structure-design work in this workspace, especially when deciding between missing local predictors and the repos that are actually present.

Tooluniverse Systems Biology

Comprehensive systems biology and pathway analysis using multiple pathway databases (Reactome, KEGG, WikiPathways, Pathway Commons, BioModels). Performs pathway enrichment, protein-pathway mapping, keyword searches, and systems-level analysis. Use when analyzing gene sets, exploring biological pathways, or investigating systems-level biology.

Poc

Structured proof-of-concept exploration with hypothesis testing and reproducible experiments

Vaex

Out-of-core DataFrame processing for billion-row scientific datasets

Lib Fluidsim

Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.

Compare Scenarios

Compare two saved OSMOSE scenario JSON files, highlighting parameter differences and their scientific impact

Pymc Distributions

Expert on PyMC probability distributions including continuous (Normal, Beta, Gamma), discrete (Poisson, Binomial), multivariate (MvNormal, Dirichlet), mixture, and timeseries distributions. Use when encountering distribution errors, parameter issues, or migrating PyMC3 distribution code.

Thoughtseeds

Expertise in computational modeling of cognitive processes, particularly in understanding thought dynamics during meditative states.

Detecting T1055 Process Injection With Sysmon

Detect process injection techniques (T1055) including classic DLL injection, process hollowing, and APC injection by analyzing Sysmon events for cross-process memory operations, remote thread creation, and anomalous DLL loading patterns.

Msm Analysis

Build and analyze Markov State Models from molecular dynamics trajectories. Covers direct MSM construction, Observable Operator Model (OOM) bias correction, implied timescale analysis, and discretization strategies. Use for analyzing conformational dynamics, estimating transition rates, and correcting estimation bias in non-equilibrium MD data.

rick-stevens-ai0

Pymatgen

Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project integration, format conversion, for computational materials science.

Epistemics

Bio/medical/scientific evidence hierarchy and anti-hallucination rules. Use when conducting claim-heavy medical research, genomics interpretation, supplement evaluation, pharmacogenomics, or clinical evidence synthesis. NOT for casual health questions, software engineering, or physics. Companion to researcher skill.

markusstrasser0

Prism Fetch Nist

Fetch hydrogen-atom data from NIST's static Handbook tables (which work through sandbox proxies, unlike the CGI endpoints). Used by prism-data-fetcher for P1-T* baseline data and P5-T2/T3 extended datasets. Retries with backoff, caches to disk, emits proper handoff-contract metadata.

Circos Genomic Visualization

Use this skill for genomic circular visualization tasks using the Circos CLI. Applies when the task involves producing Circos plots for genomic data — including karyotype/ideogram rendering, copy number histograms, B-allele frequency (BAF) scatter/line plots, and structural variant or junction link arcs. Do NOT use for chord diagrams of non-genomic data.

Dummy Dataset

为测试、原型设计或演示目的创建 CSV 或 JSON 格式的真实模拟数据集。

Version Compatibility

End-to-end multi-omics integration workflow. Orchestrates data harmonization, MOFA/mixOmics integration, factor interpretation, and downstream analysis across transcriptomics, proteomics, metabolomics, and other modalities. Use when integrating multiple omics datasets.

John-Wang-08090

Math Expression

Use when the user wants an actual math result, simplification, expansion, exact value, high-precision value, analytic solution, or numerical solution for algebra, calculus, linear algebra, series, asymptotics, or ODE/PDE problems.

wave_reader — Waveform File Reader

Read and analyze chip simulation waveform files (VCD/FST/FSDB/GHW) using the wave_reader CLI tool. Use this skill whenever the user mentions waveform files, signal values, simulation debugging, VCD/FST/FSDB/GHW files, timing diagrams, clock analysis, chip verification, or wants to inspect simulation results. Also trigger when you see .vcd, .fst, .fsdb, or .ghw file extensions in the workspace, when the user mentions signal names like clk/reset/valid/ready/data, or when debugging chip-level failures involving timing or signal transitions — even if they don't explicitly say "wave_reader".

wave_reader — Waveform File Reader

Read and analyze chip simulation waveform files (VCD/FST/FSDB/GHW) using the wave_reader CLI tool. Use this skill whenever the user mentions waveform files, signal values, simulation debugging, VCD/FST/FSDB/GHW files, timing diagrams, clock analysis, chip verification, or wants to inspect simulation results. Also trigger when you see .vcd, .fst, .fsdb, or .ghw file extensions in the workspace, when the user mentions signal names like clk/reset/valid/ready/data, or when debugging chip-level failures involving timing or signal transitions — even if they don't explicitly say "wave_reader".

Version Compatibility

Perform flux balance analysis (FBA) and flux variability analysis (FVA) on genome-scale metabolic models using COBRApy. Predict growth rates, metabolic fluxes, and optimal resource utilization. Use when predicting metabolic phenotypes or optimizing flux distributions.

John-Wang-08090

Version Compatibility

Discover novel miRNAs and quantify known miRNAs using miRDeep2 de novo prediction from small RNA-seq data. Use when identifying new miRNAs or performing comprehensive miRNA profiling with discovery.

John-Wang-08090

Version Compatibility

Create UpSet plots to visualize set intersections as an alternative to Venn diagrams using UpSetR or upsetplot. Use when comparing overlapping gene sets, peak sets, or sample groups with more than 3 sets.

John-Wang-08090

Bio Metabolomics Normalization Qc

Quality control and normalization for metabolomics data. Covers QC-based correction, batch effect removal, and data transformation methods. Use when correcting technical variation in metabolomics data before statistical analysis.