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生物信息學

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生物信息學

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生物信息學除錯銷售同市場推廣 LLM 同 AI 系統管理生產力同整合代碼質素 Git 工作流程架構模式文件項目管理測試金融同投資安全知識庫技術文檔 Backend Frontend 教育 CI/CD 自動化工具機器學習內容創作數據工程遊戲開發學術腳本編寫 CMS 同平台流動裝置雲端 IDE 插件套件同發佈數據分析框架內部結構媒體設計 Full Stack 地產同法律 CLI 工具 SQL 數據庫計算化學容器實驗室工具數據庫工具健康同健身智能合約監控域名同 DNS 工具 Web3 工具養生同健康支付文學同寫作電商開發哲學同倫理天文同物理電子商務占卜同玄學手工藝術科學計算商業應用 DeFi NoSQL 數據庫烹飪 $Undefined

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生物信息學除錯銷售同市場推廣 LLM 同 AI 系統管理生產力同整合代碼質素 Git 工作流程架構模式文件項目管理測試金融同投資安全知識庫技術文檔 Backend Frontend 教育 CI/CD 自動化工具機器學習內容創作數據工程遊戲開發學術腳本編寫 CMS 同平台流動裝置雲端 IDE 插件套件同發佈數據分析框架內部結構媒體設計 Full Stack 地產同法律 CLI 工具 SQL 數據庫計算化學容器實驗室工具數據庫工具健康同健身智能合約監控域名同 DNS 工具 Web3 工具養生同健康支付文學同寫作電商開發哲學同倫理天文同物理電子商務占卜同玄學手工藝術科學計算商業應用 DeFi NoSQL 數據庫烹飪 $Undefined

生物信息學

生物信息學

Clinvar Database

查询NCBI ClinVar变异临床意义数据库。按基因/位置搜索，解释致病性分类，通过E-utilities API或FTP访问，注释VCF文件，用于基因组医学。

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生物信息學

Sc Adaptive Qc

Perform adaptive single-cell QC filtering with user-selected mitochondrial and gene thresholds, then run doublet removal and save qc_filtered.h5ad. Use when the user requests adaptive QC, mito filtering, min genes filtering, or doublet detection for scRNA-seq.

生物信息學

Sc Marker Extractor

Extract cluster-level differential expression markers from clustered scRNA-seq data and return structured JSON for each cluster. Use when the user asks for marker genes, differential expression by cluster, or top genes for cell type annotation.

生物信息學

Bio Pathway Gsea

Gene Set Enrichment Analysis using clusterProfiler gseGO and gseKEGG. Use when analyzing ranked gene lists to find coordinated expression changes in gene sets without arbitrary significance cutoffs. Detects subtle but coordinated expression changes.

生物信息學

Anndata

单细胞分析中带注释矩阵的数据结构。用于处理.h5ad文件或与scverse生态系统集成。这是数据格式技能——用于分析工作流请使用scanpy；用于概率模型请使用scvi-tools；用于群体规模查询请使用cellxgene-census。

生物信息學

Gget

快速CLI/Python查询20+生物信息学数据库。用于快速查找：基因信息、BLAST搜索、AlphaFold结构、富集分析。最适合交互式探索、简单查询。批处理或高级BLAST请使用biopython；多数据库Python工作流请使用bioservices。

生物信息學

Biopython

综合分子生物学工具包。用于序列操作、文件解析(FASTA/GenBank/PDB)、系统发育学和程序化NCBI/PubMed访问(Bio.Entrez)。最适合批处理、定制生物信息学管道、BLAST自动化。快速查找请使用gget；多服务集成请使用bioservices。

生物信息學

Tblastn Vdb

Use when searching protein queries against translated SRA or WGS-backed VDB databases with BLAST.

生物信息學

Vcf Stats

Use when computing statistics on VCF files, filtering variant data by quality or fields, or generating summary reports from gzipped VCF inputs.

生物信息學

Vcf To Tab

Use when converting VCF genotype data to simple tabular format for downstream analysis or reporting.

生物信息學

Vcfutils Pl

Use when working with VCF file utilities from the bcftools bioconda package.

生物信息學

Yeast Database

Use when working inside the local `yeast_genome_learning` project to download, validate, and analyze Saccharomyces cerevisiae reference data through its teaching scripts.

生物信息學

Vcf Merge

Use when merging multiple VCF files by genomic position to create multi-sample VCFs from individual or fewer-sample VCFs.

生物信息學

Genome Coverage Bed

Use when computing genome-wide coverage from BED/GFF/VCF or BAM files, generating coverage histograms, BedGraph tracks, or per-position depth reports.

生物信息學

Find In Gene

Use when filtering EDirect `GENE` XML records by strand and coordinate overlap to emit matching gene names.

生物信息學

Research

Deep code research using ChunkHound — investigates architecture, patterns, and relationships across the codebase

生物信息學

Senior Scientific Writer Bae Pro

Especialista em transformar métricas de geoprocessamento e deep learning em resumos científicos (abstracts) de alto impacto seguindo a estrutura IMRaD.

生物信息學

Distributed Biographical Constraint Validation

Ensures accurate identification of a primary entity by verifying that all distinct biographical and temporal constraints are precisely met by each of its associated sub-entities.

生物信息學

Precise Temporal Entity Pinpointing

Accurately identifies a unique target entity by precisely calculating and applying complex, multi-stage temporal constraints, including ranges and specific date components, to distinguish it from temporally similar alternatives.

生物信息學

Nested Range Constraint Precision

Ensures unique entity identification by precisely applying all numerical and temporal range constraints across the target entity and its associated nested entities.

生物信息學

QTL Candidate Gene Analysis

Comprehensive QTL candidate gene analysis using the Gramene/Sorghumbase MCP server. Expression-driven pipeline: identifies genes in a QTL region, profiles their expression and their orthologs' expression across tissues, connects expression patterns to the trait of interest, then supplements with functional annotations, literature, LOF alleles, and copy number variation. Produces a ranked candidate list and interactive HTML report. Use this skill whenever the user asks about: QTL analysis, candidate gene identification, genes in a genomic interval, prioritizing genes under a QTL peak, trait-associated region analysis, or any request that combines positional gene data with functional annotation for gene ranking. Also trigger when the user mentions a chromosomal region and a trait together, even casually (e.g., "what's interesting on chr3 55-58Mb for yield in sorghum").

生物信息學

Codex People Modules

Regras para extração de dados de biografias em módulos MyBible/MySword que utilizam tabelas cruzadas (people + verse), incluindo UI visual GenealogyTree.

生物信息學

Speckit Analyze

Cross-artifact consistency and coverage analysis.

生物信息學

Fry Python Tool

Find and use existing GPU-powered computational biology tools for the Whitehead fry cluster, or scaffold a new one. Single-purpose Python tools that produce outputs (embeddings, segmentations, predictions) for downstream analysis.

生物信息學

Laravel Adjacency List

Use staudenmeir/laravel-adjacency-list to build recursive tree and graph relationships in Laravel Eloquent using common table expressions (CTE) - ancestors, descendants, trees, nested results, depth, paths, cycle detection, and custom relationships.

生物信息學

Ukb Clinical Research

This skill should be used when users need to perform clinical research tasks using UK Biobank data, including querying data fields, constructing cohorts with specific criteria, searching biomarkers, and exporting research datasets. Use when users ask about finding UKB fields, building study cohorts, querying associations between biomarkers and outcomes, or extracting data for analysis.

生物信息學

Fluid Memory

基于艾宾浩斯遗忘曲线和访问频率的衰减模型设计的遗忘和归档机制，完全依赖openclaw原生记忆系统的拟人化流体记忆系统

生物信息學

Alphafold Database

Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.

workonthestreets0

生物信息學

Arboreto

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.

workonthestreets0

生物信息學

Scientific Schematics

Create publication-quality scientific diagrams with AI-assisted iterative quality refinement. Specialized in neural network architectures, system diagrams, flowcharts, biological pathways, and complex scientific visualizations. Triggers: 画图, 画示意图, 画流程图, 论文配图, 需要一张图, scientific diagram, schematic, figure, draw neural network, system diagram, biological pathway, publication figure, create diagram, illustrate architecture.