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Ncbi Datasets Skill | Skills Pool

技能档案

Ncbi Datasets Skill

Submit compact NCBI Datasets v2 requests for assembly, genome, taxonomy, and related metadata endpoints. Use when a user wants concise NCBI Datasets summaries; save raw JSON or text only on request.

openai853 星标2026年4月9日

职业
分类: 科学计算

技能内容

Operating rules

Use scripts/ncbi_datasets.py for all Datasets v2 calls in this package.
Use explicit REST path values relative to https://api.ncbi.nlm.nih.gov/datasets/v2.
Prefer targeted metadata paths instead of broad unfiltered pulls.
Re-run requests in long conversations instead of relying on older tool output.
Treat displayed ... in tool previews as UI truncation, not literal request content.

Execution behavior

Return concise markdown summaries from the script output by default.
Return raw JSON or text only if the user explicitly asks for machine-readable output.
Prefer targeted endpoint calls instead of broad unfiltered dumps.
If the user needs the full raw response, set save_raw=true and report the saved file path.

Input

Read one JSON object from stdin.
Required field:

相关技能

快速安装

Ncbi Datasets Skill

npx skillvault add openai/openai-plugins-plugins-life-science-research-skills-ncbi-datasets-skill-skill-md

下载 Skill 打开源码仓库

作者: openai
星标: 853
更新时间: 2026年4月9日
职业

本页内容

01Operating rules

path

Optional fields: params, record_path, response_format, max_items, max_depth, timeout_sec, save_raw, raw_output_path

Common Datasets patterns:

{"path":"genome/taxon/assembly_descriptors","params":{"taxons":"9606"}}
{"path":"genome/accession/GCF_000001405.40/dataset_report"}
{"path":"taxonomy/taxon/9606"}

Output

Success returns ok, source, path metadata, and either compact records, a compact summary, or text_head.
Use raw_output_path when save_raw=true.
Failure returns ok=false with error.code and error.message.

Execution

echo '{"path":"genome/taxon/assembly_descriptors","params":{"taxons":"9606"}}' | python scripts/ncbi_datasets.py

References

No additional runtime references are required; keep the import package limited to this file and scripts/ncbi_datasets.py.

02

Execution behavior

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