Use when working with alignment files and needing statistics from HMMER's Easel toolkit.
esl-alistat [options] <alignment_file>/home/vimalinx/miniforge3/envs/bio/bin/esl-alistatesl-alistat when you need summary statistics on one or more multiple sequence alignments rather than on raw sequences.# Basic alignment statistics
esl-alistat alignment.sto
# Write a per-alignment list report
esl-alistat --list alns.list alignment.sto
# Export information-content and composition reports
esl-alistat --icinfo ic.txt --cinfo comp.txt alignment.sto
# Export pairwise-identity or posterior-probability related reports when present
esl-alistat --pcinfo pc.txt --psinfo ps.txt alignment.sto
esl-alistat <alignment_file> run to confirm the binary works in the current environment.--list, --icinfo, --cinfo, or --bpinfo only if the input alignment carries the needed annotation.--pcinfo, --psinfo, --iinfo, and --bpinfo depend on specific alignment annotations and will fail if those annotations are absent