Summarize bulk and single-cell result tables, audit requested figure specifications, generate panel plans, and produce export manifests for biomedical figures. Use when Codex needs to turn local analysis outputs into a reproducible figure planning package.
Use this skill to turn structured result tables into a reproducible figure planning package. Run it when a project already has local differential expression, marker, or embedding outputs and needs figure planning before plotting code is finalized.
scripts/result_extract.py.scripts/figure_spec_audit.py.scripts/figure_plan.py.scripts/figure_manifest.py.Prefer local files only:
Handle these planning decisions explicitly:
Run scripts/result_extract.py to:
Run scripts/figure_spec_audit.py to:
Read references/figure-types.md for supported figure families.
Run scripts/figure_plan.py to assemble:
Run scripts/figure_manifest.py to emit:
Use assets/panel-layout-template.md and assets/color-palette.txt as the default references.
Produce:
When strict mode is requested, return non-zero exit code on warn or fail.