Name: String Protein Interaction Analysis With Omicverse
Author: huamu668

Overview

Invoke this skill when the user has a list of genes and wants to explore STRING protein–protein interactions via omicverse. The workflow mirrors t_network.ipynb, covering species selection, S TRING API queries, and quick visualisation of the resulting network.

Instructions

Set up libraries
- Import omicverse as ov and call ov.utils.ov_plot_set() (or ov.plot_set()) to match omicverse aesthetics.
Collect gene inputs
- Accept a curated list of gene symbols (gene_list = [...]).
- Encourage the user to flag priority genes or categories so you can colour-code groups in the plot.
Assign metadata for plotting
- Build dictionaries mapping genes to types and colours, e.g. and .

Overview

Instructions

Set up libraries
- Import omicverse as ov and call ov.utils.ov_plot_set() (or ov.plot_set()) to match omicverse aesthetics.
Collect gene inputs
- Accept a curated list of gene symbols (gene_list = [...]).
- Encourage the user to flag priority genes or categories so you can colour-code groups in the plot.
Assign metadata for plotting
- Build dictionaries mapping genes to types and colours, e.g. and .

String Protein Interaction Analysis With Omicverse

Overview

Instructions

String Protein Interaction Analysis With Omicverse

Overview

Instructions

Examples

References

Nanoclaw Repl

Bioinformatics

Smart Explore

Vector Database Engineer

Skin Health Analyzer

Scanpy