Research timeline planning for medical research projects. Invoke for timeline tasks.
Thin wrapper that delegates timeline research to timeline-agent subagent.
IMPORTANT: This skill implements the skill-internal postflight pattern. After the subagent returns, this skill handles all postflight operations (status update, artifact linking, git commit) before returning.
Reference (do not load eagerly):
.claude/context/formats/return-metadata-file.md - Metadata file schema.claude/context/patterns/postflight-control.md - Marker file protocol.claude/context/patterns/file-metadata-exchange.md - File I/O helpers.claude/context/patterns/jq-escaping-workarounds.md - jq escaping patterns (Issue #1132)Note: This skill is a thin wrapper with internal postflight. Context is loaded by the delegated agent.
This skill activates when:
This skill routes to timeline-agent with one of two workflow types:
| Workflow Type | Preflight Status | Success Status | TODO.md Markers |
|---|---|---|---|
| timeline_research | researching | researched | [RESEARCHING] -> [RESEARCHED] |
| timeline_plan | planning | planned | [PLANNING] -> [PLANNED] |
task_number - Task number (must exist in state.json with language="present" and task_type="timeline")workflow_type - One of: timeline_research, timeline_plansession_id - Session ID from orchestratorforcing_data - Pre-gathered forcing question responses from /timeline commandValidate required inputs:
task_number - Must be provided and exist in state.jsonworkflow_type - Must be one of: timeline_research, timeline_plan# Lookup task
task_data=$(jq -r --argjson num "$task_number" \
'.active_projects[] | select(.project_number == $num)' \
specs/state.json)
# Validate exists
if [ -z "$task_data" ]; then
return error "Task $task_number not found"
fi
# Extract fields
task_type=$(echo "$task_data" | jq -r '.task_type // "present"')
status=$(echo "$task_data" | jq -r '.status')
project_name=$(echo "$task_data" | jq -r '.project_name')
description=$(echo "$task_data" | jq -r '.description // ""')
# Extract pre-gathered forcing_data (if present from Stage 0)
forcing_data=$(echo "$task_data" | jq -r '.forcing_data // null')
# Validate language is "present"
if [ "$task_type" != "present" ]; then
return error "Task $task_number has language '$task_type', expected 'present'"
fi
Update task status based on workflow type BEFORE invoking subagent.
case "$workflow_type" in
timeline_research)
preflight_status="researching"
preflight_marker="[RESEARCHING]"
;;
timeline_plan)
preflight_status="planning"
preflight_marker="[PLANNING]"
;;
esac
# Update state.json
jq --arg ts "$(date -u +%Y-%m-%dT%H:%M:%SZ)" \
--arg status "$preflight_status" \
--arg sid "$session_id" \
'(.active_projects[] | select(.project_number == '$task_number')) |= . + {
status: $status,
last_updated: $ts,
session_id: $sid
}' specs/state.json > specs/tmp/state.json && mv specs/tmp/state.json specs/state.json
Update TODO.md: Use Edit tool to change status marker to the in-progress state.
padded_num=$(printf "%03d" "$task_number")
mkdir -p "specs/${padded_num}_${project_name}"
cat > "specs/${padded_num}_${project_name}/.postflight-pending" << EOF
{
"session_id": "${session_id}",
"skill": "skill-timeline",
"task_number": ${task_number},
"operation": "${workflow_type}",
"reason": "Postflight pending: status update, artifact linking, git commit",
"created": "$(date -u +%Y-%m-%dT%H:%M:%SZ)",
"stop_hook_active": false
}
EOF
Calculate the artifact sequence number following the same pattern as skill-planner:
padded_num=$(printf "%03d" "$task_number")
task_dir="specs/${padded_num}_${project_name}"
# Get current artifact number from state.json
artifact_num=$(jq -r --argjson num "$task_number" \
'(.active_projects[] | select(.project_number == $num)).next_artifact_number // 1' \
specs/state.json)
# For research: use current number (advances it)
# For plan: use current round (artifact_num - 1)
case "$workflow_type" in
timeline_research)
current_mm=$(printf "%02d" "$artifact_num")
# Increment next_artifact_number
jq --argjson num "$task_number" \
'(.active_projects[] | select(.project_number == $num)).next_artifact_number = ('$artifact_num' + 1)' \
specs/state.json > specs/tmp/state.json && mv specs/tmp/state.json specs/state.json
;;
timeline_plan)
current_mm=$(printf "%02d" "$((artifact_num - 1))")
if [ "$current_mm" = "00" ]; then current_mm="01"; fi
;;
esac
{
"session_id": "sess_{timestamp}_{random}",
"delegation_depth": 1,
"delegation_path": ["orchestrator", "timeline", "skill-timeline"],
"timeout": 3600,
"task_context": {
"task_number": N,
"task_name": "{project_name}",
"description": "{description}",
"task_type": "present",
"task_type": "timeline"
},
"workflow_type": "timeline_research",
"forcing_data": { "...pre-gathered data if available..." },
"artifact_number": "{MM}",
"metadata_file_path": "specs/{NNN}_{SLUG}/.return-meta.json"
}
CRITICAL: Use the Task tool to spawn the subagent.
Tool: Task (NOT Skill)
Parameters:
- subagent_type: "timeline-agent"
- prompt: [Include task_context, delegation_context, workflow_type, forcing_data, artifact_number, metadata_file_path]
- description: "Execute {workflow_type} workflow for task {N}"
DO NOT use Skill(timeline-agent) - this will FAIL.
CRITICAL: If you performed the work above WITHOUT using the Task tool (i.e., you read files,
wrote artifacts, or updated metadata directly instead of spawning a subagent), you MUST write a
.return-meta.json file now before proceeding to postflight. Use the schema from
return-metadata-file.md with the appropriate status value for this operation.
If you DID use the Task tool, skip this stage -- the subagent already wrote the metadata.
The following stages MUST execute after work is complete, whether the work was done by a subagent or inline (Stage 5b). Do NOT skip these stages for any reason.
metadata_file="specs/${padded_num}_${project_name}/.return-meta.json"
if [ -f "$metadata_file" ] && jq empty "$metadata_file" 2>/dev/null; then
meta_status=$(jq -r '.status' "$metadata_file")
artifact_path=$(jq -r '.artifacts[0].path // ""' "$metadata_file")
artifact_type=$(jq -r '.artifacts[0].type // ""' "$metadata_file")
artifact_summary=$(jq -r '.artifacts[0].summary // ""' "$metadata_file")
else
echo "Error: Invalid or missing metadata file"
meta_status="failed"
fi
| Workflow Type | Meta Status | Final state.json | Final TODO.md |
|---|---|---|---|
| timeline_research | researched | researched | [RESEARCHED] |
| timeline_research | partial | researching | [RESEARCHING] |
| timeline_plan | planned | planned | [PLANNED] |
| timeline_plan | partial | planning | [PLANNING] |
| any | failed | (keep preflight) | (keep preflight marker) |
case "$workflow_type" in
timeline_research)
if [ "$meta_status" = "researched" ]; then
postflight_status="researched"
postflight_marker="[RESEARCHED]"
fi
;;
timeline_plan)
if [ "$meta_status" = "planned" ]; then
postflight_status="planned"
postflight_marker="[PLANNED]"
fi
;;
esac
if [ -n "$postflight_status" ]; then
jq --arg ts "$(date -u +%Y-%m-%dT%H:%M:%SZ)" \
--arg status "$postflight_status" \
'(.active_projects[] | select(.project_number == '$task_number')) |= . + {
status: $status,
last_updated: $ts
}' specs/state.json > specs/tmp/state.json && mv specs/tmp/state.json specs/state.json
fi
Update TODO.md: Use Edit tool to change status marker to the final success state.
if [ -n "$artifact_path" ]; then
# Step 1: Filter out existing artifacts of same type
jq '(.active_projects[] | select(.project_number == '$task_number')).artifacts =
[(.active_projects[] | select(.project_number == '$task_number')).artifacts // [] | .[] | select(.type == "report" | not)]' \
specs/state.json > specs/tmp/state.json && mv specs/tmp/state.json specs/state.json
# Step 2: Add new artifact
jq --arg path "$artifact_path" \
--arg type "$artifact_type" \
--arg summary "$artifact_summary" \
'(.active_projects[] | select(.project_number == '$task_number')).artifacts += [{"path": $path, "type": $type, "summary": $summary}]' \
specs/state.json > specs/tmp/state.json && mv specs/tmp/state.json specs/state.json
fi
Update TODO.md: Link artifact using count-aware format. Apply the four-case Edit logic from @.claude/context/patterns/artifact-linking-todo.md with field_name=**Research**, next_field=**Plan**.
case "$workflow_type" in
timeline_research)
commit_action="complete timeline research"
;;
timeline_plan)
commit_action="create timeline plan"
;;
esac
git add -A
git commit -m "task ${task_number}: ${commit_action}
Session: ${session_id}
On commit failure: Non-blocking. Log failure but continue.
rm -f "specs/${padded_num}_${project_name}/.postflight-pending"
rm -f "specs/${padded_num}_${project_name}/.postflight-loop-guard"
rm -f "specs/${padded_num}_${project_name}/.return-meta.json"
Timeline Research Success:
Timeline research completed for task {N}:
- Project: {mechanism}, {years}-year, {aims} specific aims
- Critical path: {E} months (95% CI: {low}-{high})
- Regulatory milestones: {count}
- Created report at specs/{NNN}_{SLUG}/reports/{MM}_timeline-research.md
- Status updated to [RESEARCHED]
- Changes committed with session {session_id}
Partial Return:
Timeline research partially completed for task {N}:
- {completed_actions}
- {failed_action} failed: {reason}
- Partial report at specs/{NNN}_{SLUG}/reports/{MM}_timeline-research.md
- Status remains [{preflight_marker}] - run /timeline {N} to continue
Timeline skill error for task {N}:
- Task not found in state.json
- Verify task exists with /task --sync
- No status changes made
Timeline skill error for task {N}:
- Task has language '{language}', expected 'present'
- Use /timeline to create timeline tasks
- No status changes made
Keep status at preflight level, preserve postflight marker, report error with resume guidance.
Non-blocking. Log failure but continue with success response.
This skill returns a brief text summary (NOT JSON). The JSON metadata is written to the file and processed internally.