Use when summarizing an RNA folding landscape by counting how many structures fall into each energy band, rather than enumerating individual folds one by one.
RNAdos -s SEQUENCE/home/vimalinx/miniforge3/envs/bio/bin/RNAdosreferences/help.md for complete options and detailsRNAdos when you want a compact view of the folding landscape as counts per energy band instead of explicit suboptimal structures.-e when the default 0 kcal/mol ceiling truncates energy bands you care about.-j when the build supports OpenMP and the calculation is large enough to benefit from more threads.# Density of states for a single RNA sequence
RNAdos -s GGGAAAUCC
# Count structures up to a higher energy threshold
RNAdos -s GGGAAAUCC -e 5
# Run with multiple threads when available
RNAdos -s GGGAAAUCC -j 4
# Recompute the landscape under a different temperature
RNAdos -s GGGAAAUCC -T 25
RNAdos -s SEQUENCE with optional parameters like -T for temperature or --salt for salt concentration--max-energy threshold if you need to count structures beyond the default 0 kcal/mol-e if higher energy states are relevant-T if working under different conditions