Use when building or refreshing a local RefSeq NM CDS archive for offline accession and coding-sequence lookups.
archive-nmcds [-index|-clean|-scrub|-scour|-erase|-zap]/home/vimalinx/miniforge3/envs/bio/bin/archive-nmcdsreferences/help.md for complete documentation# 1) Download RefSeq mRNA files and rebuild the local archive content
export EDIRECT_LOCAL_ARCHIVE=/data/edirect
archive-nmcds
# 2) Force HTTPS transfer instead of the default FTP / Aspera path
archive-nmcds -https
# 3) Rebuild incremental index, invert, merge, and postings layers
archive-nmcds -index
EDIRECT_LOCAL_ARCHIVE and confirm the archive root is writable.archive-nmcds to stage source files, generate accession/CDS tables, and populate the archive.-index as a separate follow-up step when you need refreshed search/posting structures.-clean, -scrub, -scour, -erase, or -zap only when you truly need to tear down stale layers before rebuilding.--help and --version are not metadata switches here; they still walk through setup, download, and generation code paths.EDIRECT_LOCAL_ARCHIVE, pm-setup, and pm-prepare to be available.-clean removes incremental/index state, while -zap removes the source records and the remaining archive tree.