Mgnify Skill

Operating rules

• Use scripts/rest_request.py for all MGnify calls.
• Use base_url=https://www.ebi.ac.uk/metagenomics/api/v1.
• MGnify uses JSON:API-style responses. Prefer record_path=data for collection endpoints.
• Keep requests narrow by study accession, sample accession, or biome whenever possible.
• Re-run requests in long conversations instead of relying on older tool output.

Execution behavior

• Return concise markdown summaries from the script JSON by default.
• Return raw JSON only if the user explicitly asks for machine-readable output.
• Prefer these paths: studies, samples, and biomes.

Input

• Read one JSON object from stdin.
• Required fields: base_url, path
• Optional fields: method, , , , , , , , , , ,