GEO expression skill. Gene Expression Omnibus data retrieval, microarray/RNA-seq dataset processing, GEO2R analysis, and cross-platform data normalization. Use when working with gene expression omnibus data retrieval, microarray/rna-seq dataset processing, geo2r analysis.
GEO expression skill. Gene Expression Omnibus data retrieval, microarray/RNA-seq dataset processing, GEO2R analysis, and cross-platform data normalization.
logs/process-log.jsonl.report.md: concise method, results, interpretation, and file inventory in the user's language.results/: structured outputs, metrics, model artifacts, or extracted findings.figures/: English-only charts, diagrams, or panels when visual output is needed.data/: processed or derived datasets when transformation occurs.External tools available via ToolUniverse MCP server. Falls back to Python
requests+ public REST APIs when MCP is unavailable.
| Source | Tool | Description |
|---|---|---|
| GEO | GEO_search_datasets | GEO API |
| GEO | GEO_get_dataset | GEO API |
| GEO | GEO_get_samples | GEO API |
report.md and logs/process-log.jsonl reference the generated artifacts.If any gate fails: identify the specific failing check, fix the issue, and re-validate before proceeding.
logs/process-log.jsonl is updated with execution trace