Use this skill when the user is analyzing Vizgen MERFISH spatial transcriptomics data, or files such as detected_transcripts.csv, cell_boundaries.parquet, cell_metadata.csv, or MERFISH output directories. Use it for cell segmentation, data loading, preprocessing, QC, spatial analysis, and secondary analysis (cell typing, domain detection).
Use this skill for Vizgen MERFISH platform detection, workflow order, step execution, and cell segmentation routing.
Vizgen, MERFISH, or MERSCOPEdetected_transcripts.csv, cell_boundaries.parquet, or cell_metadata.csvIf the platform is still unclear, ask before executing platform-specific steps.
Read main.md for the step plan, then load each step doc before executing it.
If latch-workflows, latch-plots-ui, or latch-data-access are available, prefer them for:
If those sibling skills are not available, use the local wf/, steps/, and README.md docs directly.