Track and reconcile taxonomy updates across NCBI, GTDB, ICTV, and community eukaryote frameworks with versioned provenance.
Use authoritative sources to report taxonomy changes with explicit versions, dates, and provenance.
| Task | Action |
|---|---|
| Sources | See reference/sources.md |
| Tools | See reference/tools.md |
| IDs/ranks | See reference/ranks-and-identifiers.md |
| Report template | See reference/report-template.md |
| QA checklist | See reference/qa-checklist.md |
| Environment |
See env/README.md |
Domains: Bacteria + Archaea
Timeframe: last 12 months
Output: summary table + pipeline impact notes
Issue: Conflicting taxonomy between sources Solution: Report both with explicit conflict flags and provenance.
Issue: Missing stable IDs Solution: Resolve via TaxonKit and capture merged/deleted taxid warnings.