Use when working inside the local `yeast_genome_learning` project to download, validate, and analyze Saccharomyces cerevisiae reference data through its teaching scripts.
Project-specific gateway for /home/vimalinx/Projects/bio_studio/projects/yeast_genome_learning. This is a learning project, not a single executable: the real entrypoints are the staged Bash scripts under scripts/, while scripts/pipeline.py provides a compatibility wrapper for --steps and --validate.
/home/vimalinx/Projects/bio_studio/projects/yeast_genome_learningbash scripts/01_setup_database.shpython scripts/pipeline.py --steps# List the available learning steps
cd /home/vimalinx/Projects/bio_studio/projects/yeast_genome_learning
python scripts/pipeline.py --steps
# Download the yeast database bundle
cd /home/vimalinx/Projects/bio_studio/projects/yeast_genome_learning
bash scripts/01_setup_database.sh
# Verify the setup, then extract a gene
cd /home/vimalinx/Projects/bio_studio/projects/yeast_genome_learning
bash scripts/02_verify_install.sh
bash scripts/03_extract_gene.sh ACT1
pipeline.py only as a compatibility helper for listing/validating steps.python scripts/pipeline.py --steps works locally and lists the current teaching steps, but pipeline.py is only a compatibility wrapper.scripts/01_setup_database.sh downloads data from NCBI/SGD over FTP/HTTP, so network access is required.samtools and makeblastdb are optional in the setup script: if missing, indexing or BLAST database creation is skipped with warnings.~/bio_studio/projects/yeast_genome_learning/; the actual workspace path is /home/vimalinx/Projects/bio_studio/projects/yeast_genome_learning.