Use when invoking the public `transmute` wrapper for format conversion, sequence editing, or shell-level helper modes that may be intercepted before dispatch to the platform binary.
Public wrapper script for the NCBI transmute toolkit. Some modes are handled directly in shell, Perl, Python, or xmllint helpers, while the remaining arguments are passed through to the compiled platform-specific executable such as transmute.Linux.
transmute [options]/home/vimalinx/miniforge3/envs/bio/bin/transmutetransmute.Linuxtransmute entry point instead of calling the platform binary directlytransmute -help-j2p, -x2p, -sort-by-length, or XML encode/decode helpers# Convert JSON to XML through the public wrapper
printf '{"a":1}\n' | transmute -j2x -set Set -rec Rec
# Pretty-print JSON using the wrapper's python helper path
printf '{"a":1}\n' | transmute -j2p
# Wrapper-level line-length sort helper
printf 'bbb\na\ncc\n' | transmute -sort-by-length
transmute -help to choose the right mode.transmute.Linux when you want portability or wrapper-only helper modes.transmute -help and transmute -version both work here and report version 24.0.-encodeXML, -decodeXML, -plainXML, -x2p, -j2p, -x2j, -word-pairs, -sort-by-length, and multiple newline-conversion helpers.-x2p needs xmllint, -j2p needs python3, and several helpers require perl.printf '{"a":1}\n' | transmute -j2x -set Set -rec Rec produced a wrapped XML document with <Set><Rec><a>1</a></Rec></Set>.transmute.<platform>.gz rather than failing silently.