Use when scanning a reference index for all high-similarity genomic locations of one specific read sequence string.
subread-fullscan [options] -i <index_name> <read_string>/home/vimalinx/miniforge3/envs/bio/bin/subread-fullscanreferences/help.md; local no-argument execution is the most useful way to see usage textsubread-fullscan when you want to probe where one literal read sequence could map across the whole indexed genome.# Scan the genome for all high-similarity hits to one read sequence
subread-fullscan -i ref_index ACGTACGTACGTACGT
# Tighten the minimum matched fraction
subread-fullscan -i ref_index -m 0.95 ACGTACGTACGTACGT
-m if too many repetitive hits are returned.-i expects the index basename, not the reference FASTA.--help and --version are not real help paths.-m is a fraction of matched bases, not a count.