Scientific Single Cell Genomics

Single-cell genomics

Single-cell genomics skill. scRNA-seq analysis (Scanpy/Seurat), cell clustering, trajectory inference, cell type annotation, and gene regulatory network inference.

Use This Skill When

• ScRNA-seq analysis (Scanpy/Seurat).
• Cell clustering.
• Trajectory inference.
• Cell type annotation.
• Gene regulatory network inference.

Required Inputs

• Research objective, decision target, or hypothesis.
• Available data, source constraints, and domain assumptions.
• Required outputs, success metrics, and deadline or reproducibility constraints.

Workflow

1. Confirm scope, assumptions, and the exact artifact set to save.
2. Apply the narrowest domain method that answers the request with defensible evidence.
3. Save code, tables, figures, and intermediate outputs to files instead of chat-only output.