Design an epidemiological study using observational data. Use when planning a new analysis, defining research questions, identifying exposures, outcomes, and confounders, or structuring a study protocol. Covers cohort, cross-sectional, and ecological designs common in infectious disease epidemiology.
Work through each section with the user, asking clarifying questions at each step.
Frame the question using the PECO structure:
Clarify the study aim:
Distinguish:
/dag-reasoning)Draft a one-sentence research question.
Classify using standard epidemiological designs:
| Design | Unit | Temporal | When to use |
|---|---|---|---|
| Cohort (prospective) | Individual | Follow-up | Incidence, risk factors |
| Cohort (retrospective) | Individual | Historical | Existing records |
| Cross-sectional | Individual | Snapshot | Prevalence, surveys |
| Case-control | Individual | Lookback | Rare outcomes |
| Ecological | Group/area | Variable | Population-level patterns |
For forecast evaluation: frame as "retrospective observational study of forecast performance" where the unit of observation is individual forecasts or forecast-target pairs.
See references/study-designs.md for detailed guidance on each design.
State inherent limitations of the chosen design.
List all variables and classify each:
For each confounder, justify inclusion with a brief causal argument.
Consider using /dag-reasoning to formalise the causal structure.
Define:
Consider:
Pre-specify:
Generate a structured study protocol in markdown covering sections 1-5. Flag decisions that will need explicit justification in the manuscript Methods section.