Persistent research knowledge base that accumulates papers, ideas, experiments, claims, and their relationships across the entire research lifecycle. Inspired by Karpathy's LLM Wiki pattern. Use when user says "知识库", "research wiki", "add paper", "wiki query", "查知识库", or wants to build/query a persistent field map.
Subcommand: $ARGUMENTS
The research wiki is a persistent, per-project knowledge base that accumulates structured knowledge across the entire ARIS research lifecycle. Unlike one-off literature surveys that are used and forgotten, the wiki compounds — every paper read, idea tested, experiment run, and review received makes the wiki smarter.
Inspired by Karpathy's LLM Wiki pattern: compile knowledge once, keep it current, don't re-derive on every query.
| Entity | Directory | Node ID format |
|---|
| What it represents |
|---|
| Paper | papers/ | paper:<slug> | A published or preprint research paper |
| Idea | ideas/ | idea:<id> | A research idea (proposed, tested, or failed) |
| Experiment | experiments/ | exp:<id> | A concrete experiment run with results |
| Claim | claims/ | claim:<id> | A testable scientific claim with evidence status |
graph/edges.jsonl)| Edge type | From → To | Meaning |
|---|---|---|
extends | paper → paper | Builds on prior work |
contradicts | paper → paper | Disagrees with results/claims |
addresses_gap | paper|idea → gap | Targets a known field gap |
inspired_by | idea → paper | Idea sourced from this paper |
tested_by | idea|claim → exp | Tested in this experiment |
supports | exp → claim|idea | Experiment confirms claim |
invalidates | exp → claim|idea | Experiment disproves claim |
supersedes | paper → paper | Newer work replaces older |
Edges are stored in graph/edges.jsonl only. The ## Connections section on each page is auto-generated from the graph — never hand-edit it.
research-wiki/
index.md # categorical index (auto-generated)
log.md # append-only timeline
gap_map.md # field gaps with stable IDs (G1, G2, ...)
query_pack.md # compressed summary for /aris-idea-creator (auto-generated, max 8000 chars)
papers/
<slug>.md # one page per paper
ideas/
<idea_id>.md # one page per idea
experiments/
<exp_id>.md # one page per experiment
claims/
<claim_id>.md # one page per testable claim
graph/
edges.jsonl # materialized current relationship graph
/aris-research-wiki initInitialize the wiki for the current project:
research-wiki/ directory structureindex.md, log.md, gap_map.mdgraph/edges.jsonl/aris-research-wiki ingest "<paper title>" — arxiv: <id>Add a paper to the wiki:
<first_author_last_name><year>_<keyword> (e.g., chen2025_factorized_gap)paper:<slug> already exists, update instead of creatingpapers/<slug>.md with full schema (see below)graph/edges.jsonlindex.mdquery_pack.mdlog.mdPaper page schema:
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