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Civic Skill | Skills Pool

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Civic Skill

Submit compact CIViC GraphQL requests for cancer variant interpretation schema inspection and targeted evidence retrieval. Use when a user wants concise CIViC summaries

openai853 starsApr 9, 2026

Occupation
Categories: Bioinformatics

Skill Content

Operating rules

Use scripts/civic_graphql.py for all CIViC GraphQL work.
Keep selection sets narrow and start with schema or targeted entity queries.
Use query_path for longer GraphQL documents instead of pasting large inline queries.
Re-run requests in long conversations instead of relying on older tool output.

Execution behavior

Return concise markdown summaries from the script JSON by default.
Return raw JSON only if the user explicitly asks for machine-readable output.
Prefer sanity, schema, and targeted evidence queries over broad graph dumps.

Input

Read one JSON object from stdin.
Required field: query or query_path
Optional fields: variables, max_items, max_depth, timeout_sec, save_raw,

Related Skills

Quick Install

Civic Skill

npx skillvault add openai/openai-plugins-plugins-life-science-research-skills-civic-skill-skill-md

Download Skill Open repository

Author: openai
stars: 853
Updated: Apr 9, 2026
Occupation

On this page

01Operating rules

raw_output_path

Common CIViC patterns:

{"query":"query { __typename }"}
{"query":"query { __schema { queryType { fields { name } } } }","max_items":20}

Output

Success returns ok, source, top_keys, a compact summary, and raw_output_path when save_raw=true.
Failure returns ok=false with error.code such as invalid_json, invalid_input, network_error, invalid_response, or graphql_error.

Execution

echo '{"query":"query { __typename }"}' | python scripts/civic_graphql.py

References

No additional runtime references are required; keep the import package limited to this file and scripts/civic_graphql.py.

02

Execution behavior

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