Protein Structure Prediction

Protein Structure Prediction (ESMFold/AF3)

The Protein Structure Prediction Skill provides an interface to state-of-the-art folding models. It takes an amino acid sequence and returns a PDB file or structure metrics (pLDDT).

When to Use This Skill

• When you have a protein sequence and need its 3D coordinates.
• To check if a designed sequence folds into a stable structure.
• To prepare a receptor for docking simulations.

Core Capabilities

1. Folding: Generates atomic coordinates (PDB format).
2. Confidence Scoring: Returns pLDDT scores per residue.
3. Visualization: (Optional) Generates a static view of the structure.

Workflow

1. Input: Amino acid sequence (FASTA string).