Query KG-Microbe for organism information, growth media preferences, and metabolic capabilities
Query the KG-Microbe knowledge graph for organism information including taxonomy, phenotypic traits, growth media, and media composition.
poetry run kg query-organism "Eggerthella lenta"
poetry run kg query-organism "Corynebacterium glutamicum" -o report.md
--db-path PATH: Custom database location (default: data/merged/kg-microbe.duckdb)--force-reload: Rebuild database from TSV files--nodes-path PATH: Custom nodes.tsv location--edges-path PATH: Custom edges.tsv location--output FILE: Save report to file instead of printingbiolink:located_in) and carry the METPO semantics in the relation column — METPO:2000517 (grows in) and METPO:2000518 (doesn't grow in). Filter on relation when querying.