QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis
name qiime2-microbiome-analyzer description QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis allowed-tools ["Read","Write","Glob","Grep","Edit","WebFetch","WebSearch","Bash"] metadata {"version":"1.0","category":"bioinformatics","tags":["metagenomics","microbiome","16s","diversity"]} QIIME2 Microbiome Analyzer Skill Purpose Enable QIIME2 microbiome analysis for 16S rRNA profiling and diversity analysis. Capabilities Demultiplexing and denoising (DADA2) Taxonomic classification Alpha diversity metrics Beta diversity analysis Differential abundance testing Phylogenetic analysis Usage Guidelines Use DADA2 for denoising amplicon data Select appropriate taxonomic classifier Calculate diversity metrics with rarefaction Visualize beta diversity with ordination Test differential abundance appropriately Document pipeline parameters Dependencies QIIME2 DADA2 phyloseq Process Integration 16S rRNA Microbiome Analysis (16s-microbiome-analysis)