Use when translating nucleotide sequences to amino acid sequences using Easel's translation utility from the HMMER suite.
esl-translate [-options] <seqfile>/home/vimalinx/miniforge3/envs/bio/bin/esl-translatereferences/help.md for detailed options (run esl-translate -h)esl-translate when you need quick ORF-oriented translation of nucleotide sequences into amino acid sequences.--watson or --crick when you only want one strand instead of both.-l, -m, or -M when you need to constrain the ORFs that are reported.# Default six-frame translation of nucleotide sequences
esl-translate transcripts.fa > orfs.fa
# Require longer ORFs
esl-translate -l 50 transcripts.fa > long_orfs.fa
# Restrict to Watson strand only
esl-translate --watson transcripts.fa > watson_orfs.fa
# Use bacterial genetic code and only AUG starts
esl-translate -c 11 -m transcripts.fa > bacterial_orfs.fa
esl-translate -h to review available optionsesl-translate [-options] <seqfile> with desired options-h for help (not --help or --version which are unsupported)<seqfile>-m and -M are stricter start-codon filters and can substantially reduce the number of reported ORFs