Scientific Cellxgene Census

CellxGene Census

CellxGene Census skill. Single-cell RNA-seq data retrieval from CZ CELLxGENE, cell type annotation, cross-dataset comparison, and gene expression atlas queries.

Use This Skill When

• Single-cell RNA-seq data retrieval from CZ CELLxGENE.
• Cell type annotation.
• Cross-dataset comparison.
• Gene expression atlas queries.

Required Inputs

• Research objective, decision target, or hypothesis.
• Available data, source constraints, and domain assumptions.
• Required outputs, success metrics, and deadline or reproducibility constraints.

Workflow

1. Confirm scope, assumptions, and the exact artifact set to save.
2. Apply the narrowest domain method that answers the request with defensible evidence.
3. Save code, tables, figures, and intermediate outputs to files instead of chat-only output.