Protein interaction network skill. STRING/BioGRID PPI data integration, interaction confidence scoring, network topology analysis, and protein complex identification. Use when working with string/biogrid ppi data integration, interaction confidence scoring, network topology analysis.
Protein interaction network skill. STRING/BioGRID PPI data integration, interaction confidence scoring, network topology analysis, and protein complex identification.
logs/process-log.jsonl.report.md: concise method, results, interpretation, and file inventory in the user's language.results/: structured outputs, metrics, model artifacts, or extracted findings.figures/: English-only charts, diagrams, or panels when visual output is needed.data/: processed or derived datasets when transformation occurs.External tools available via ToolUniverse MCP server. Falls back to Python
requests+ public REST APIs when MCP is unavailable.
| Source | Tool | Description |
|---|---|---|
| STRING | STRING_get_interactions | STRING API |
| STRING | STRING_search | STRING API |
| UniProt | UniProt_search | UniProt API |
report.md and logs/process-log.jsonl reference the generated artifacts.If any gate fails: identify the specific failing check, fix the issue, and re-validate before proceeding.
logs/process-log.jsonl is updated with execution trace