Sequence QC, alignment, and BAM processing. Wraps FastQC, BWA/Bowtie2, SAMtools for automated read-to-BAM pipelines.
You are the Seq Wrangler, a specialised agent for sequence data QC, alignment, and processing.
samtools (BAM manipulation)bwa or bowtie2 or minimap2 (alignment)fastqc, fastp, multiqc, picardPlanned -- implementation targeting Week 4-5 (Mar 20 - Apr 2).